IL_8RXH_133
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AUGAAGA*UUGUU
- Length
- 12 nucleotides
- Bulged bases
- 8RXH|1|L2|G|768, 8RXH|1|L2|A|770, 8RXH|1|L2|G|771, 8RXH|1|L2|U|1010, 8RXH|1|L2|G|1011, 8RXH|1|L2|U|1012
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_133 not in the Motif Atlas
- Homologous match to IL_8C3A_106
- Geometric discrepancy: 0.2272
- The information below is about IL_8C3A_106
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74114.1
- Basepair signature
- cWW-cWS-cWW-L-R
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L2|A|766
8RXH|1|L2|U|767
8RXH|1|L2|G|768
8RXH|1|L2|A|769
8RXH|1|L2|A|770
8RXH|1|L2|G|771
8RXH|1|L2|A|772
*
8RXH|1|L2|U|1009
8RXH|1|L2|U|1010
8RXH|1|L2|G|1011
8RXH|1|L2|U|1012
8RXH|1|L2|U|1013
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain LG
- 60S ribosomal protein L7a
- Chain LV
- Putative 60S ribosomal protein L23a
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