IL_8RXH_140
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GG*CAU
- Length
- 5 nucleotides
- Bulged bases
- 8RXH|1|L2|A|1053
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_140 not in the Motif Atlas
- Homologous match to IL_8C3A_107
- Geometric discrepancy: 0.1082
- The information below is about IL_8C3A_107
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 127
Unit IDs
8RXH|1|L2|G|1041
8RXH|1|L2|G|1042
*
8RXH|1|L2|C|1052
8RXH|1|L2|A|1053
8RXH|1|L2|U|1054
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LS
- Putative 60S ribosomal protein L21
- Chain Lb
- 60S ribosomal protein L29
- Chain Lp
- Putative 60S ribosomal protein L44
- Chain S3
- Transfer RNA; tRNA
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