IL_8RXH_164

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

ACC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_164 not in the Motif Atlas

Geometric match to IL_4V9F_097

Geometric discrepancy: 0.3089

The information below is about IL_4V9F_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8RXH|1|L3|A|77
8RXH|1|L3|C|78
8RXH|1|L3|C|98
*
8RXH|1|L3|G|142
8RXH|1|L3|A|143
8RXH|1|L3|U|144

Current chains

Chain L3

SR1_chain_3

Nearby chains

Chain Lh

Putative 60S ribosomal protein L34