IL_8RXH_166

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCC,GGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_166 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1257

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|L3|G|103
8RXH|1|L3|C|104
8RXH|1|L3|C|105
*
8RXH|1|L3|G|135
8RXH|1|L3|G|136
8RXH|1|L3|C|137

Current chains

Chain L3

SR1_chain_3

Nearby chains

Chain LY

60S ribosomal protein L27

Chain Ld

60S ribosomal protein L30

Chain Lh

Putative 60S ribosomal protein L34