3D structure

PDB id
8RXH (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
Experimental method
ELECTRON MICROSCOPY
Resolution
2.93 Å

Loop

Sequence
GCAUGAG*CUGAAC
Length
13 nucleotides
Bulged bases
8RXH|1|L5|G|99
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

8RXH|1|L5|G|40
8RXH|1|L5|C|41
8RXH|1|L5|A|42
8RXH|1|L5|U|43
8RXH|1|L5|G|44
8RXH|1|L5|A|45
8RXH|1|L5|G|46
*
8RXH|1|L5|C|97
8RXH|1|L5|U|98
8RXH|1|L5|G|99
8RXH|1|L5|A|100
8RXH|1|L5|A|101
8RXH|1|L5|C|102

Current chains

Chain L5
SR4_chain_5

Nearby chains

Chain L2
Large subunit ribosomal RNA; LSU rRNA
Chain L3
SR1_chain_3
Chain L4
Large subunit ribosomal RNA; LSU rRNA
Chain LB
Putative ribosomal protein L3
Chain LX
Putative ribosomal protein L24
Chain Le
Putative 60S ribosomal subunit protein L31

Coloring options:

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