IL_8RXH_215

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GC*GUUC

Length

6 nucleotides

Bulged bases

8RXH|1|S1|U|326, 8RXH|1|S1|U|327

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_215 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.2342

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8RXH|1|S1|G|321
8RXH|1|S1|C|322
*
8RXH|1|S1|G|325
8RXH|1|S1|U|326
8RXH|1|S1|U|327
8RXH|1|S1|C|328

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SG

40S ribosomal protein S6