IL_8RXH_225

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GG*CAAUAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_225 not in the Motif Atlas

Geometric match to IL_1FUF_002

Geometric discrepancy: 0.2095

The information below is about IL_1FUF_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8RXH|1|S1|G|561
8RXH|1|S1|G|562
*
8RXH|1|S1|C|579
8RXH|1|S1|A|580
8RXH|1|S1|A|581
8RXH|1|S1|U|582
8RXH|1|S1|A|583
8RXH|1|S1|U|584
8RXH|1|S1|C|585

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SD

Putative 40S ribosomal protein S9

Chain SZ

40S ribosomal protein S24