IL_8RXH_228

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GUU(A2M)AAG*UC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_228 not in the Motif Atlas

Homologous match to IL_8C3A_426

Geometric discrepancy: 0.1554

The information below is about IL_8C3A_426

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.4

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

8RXH|1|S1|G|665
8RXH|1|S1|U|666
8RXH|1|S1|U|667
8RXH|1|S1|A2M|668
8RXH|1|S1|A|669
8RXH|1|S1|A|670
8RXH|1|S1|G|671
*
8RXH|1|S1|U|1456
8RXH|1|S1|C|1457

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SP

Putative 40S ribosomal protein S23

Chain Sb

40S ribosomal protein S26