IL_8RXH_246
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GAGAUC*GUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_246 not in the Motif Atlas
- Geometric match to IL_4V88_435
- Geometric discrepancy: 0.1328
- The information below is about IL_4V88_435
- Detailed Annotation
- Other IL
- Broad Annotation
- Other IL
- Motif group
- IL_22046.1
- Basepair signature
- cWW-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|S1|G|1232
8RXH|1|S1|A|1233
8RXH|1|S1|G|1234
8RXH|1|S1|A|1235
8RXH|1|S1|U|1236
8RXH|1|S1|C|1237
*
8RXH|1|S1|G|1261
8RXH|1|S1|U|1262
8RXH|1|S1|C|1263
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LA
- Putative 60S ribosomal protein L2
- Chain SO
- 40S ribosomal protein S14
- Chain Sb
- 40S ribosomal protein S26
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