IL_8RXH_254

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GA*UAC

Length

5 nucleotides

Bulged bases

8RXH|1|S1|A|2051

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_254 not in the Motif Atlas

Homologous match to IL_8C3A_447

Geometric discrepancy: 0.0956

The information below is about IL_8C3A_447

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

112

Unit IDs

8RXH|1|S1|G|1498
8RXH|1|S1|A|1499
*
8RXH|1|S1|U|2050
8RXH|1|S1|A|2051
8RXH|1|S1|C|2052

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain SF

40S ribosomal protein S2

Chain Sb

40S ribosomal protein S26