IL_8RXH_264

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AGA*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AGA,UCU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_264 not in the Motif Atlas

Geometric match to IL_3MEI_002

Geometric discrepancy: 0.1755

The information below is about IL_3MEI_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|S1|A|1588
8RXH|1|S1|G|1589
8RXH|1|S1|A|1590
*
8RXH|1|S1|U|1599
8RXH|1|S1|C|1600
8RXH|1|S1|U|1601

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SS

Putative ribosomal protein S29

Chain SW

Putative 40S ribosomal protein S15

Chain Sf

Ubiquitin-60S ribosomal protein L40