IL_8RXH_269

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

G(OMG)A*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_269 not in the Motif Atlas

Geometric match to IL_6IA2_001

Geometric discrepancy: 0.1238

The information below is about IL_6IA2_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|S1|G|1646
8RXH|1|S1|OMG|1647
8RXH|1|S1|A|1648
*
8RXH|1|S1|U|1653
8RXH|1|S1|U|1654
8RXH|1|S1|U|1655

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SB

40S ribosomal protein SA

Chain SF

40S ribosomal protein S2

Chain SY

Putative 40S ribosomal protein S21