IL_8RXH_273

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

AG*CGGU

Length

6 nucleotides

Bulged bases

8RXH|1|S1|G|1766, 8RXH|1|S1|G|1767

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_273 not in the Motif Atlas

Geometric match to IL_1FUF_003

Geometric discrepancy: 0.1518

The information below is about IL_1FUF_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

8RXH|1|S1|A|1706
8RXH|1|S1|G|1707
*
8RXH|1|S1|C|1765
8RXH|1|S1|G|1766
8RXH|1|S1|G|1767
8RXH|1|S1|U|1768

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SL

Putative 40S ribosomal protein S16

Chain SX

40S ribosomal protein S19-like protein