IL_8RXH_276
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CA*UAG
- Length
- 5 nucleotides
- Bulged bases
- 8RXH|1|S1|A|1949
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_276 not in the Motif Atlas
- Geometric match to IL_4AOB_001
- Geometric discrepancy: 0.3142
- The information below is about IL_4AOB_001
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_14190.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 160
Unit IDs
8RXH|1|S1|C|1877
8RXH|1|S1|A|1878
*
8RXH|1|S1|U|1948
8RXH|1|S1|A|1949
8RXH|1|S1|G|1950
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain SL
- Putative 40S ribosomal protein S16
- Chain SR
- Putative 40S ribosomal protein S18
- Chain SX
- 40S ribosomal protein S19-like protein
- Chain Sa
- 40S ribosomal protein S25
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