IL_8RXH_280

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGGACC*GCGCAAC

Length

13 nucleotides

Bulged bases

8RXH|1|S1|C|1988

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_280 not in the Motif Atlas

Geometric match to IL_4V88_462

Geometric discrepancy: 0.1279

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

8RXH|1|S1|G|1959
8RXH|1|S1|G|1960
8RXH|1|S1|G|1961
8RXH|1|S1|A|1962
8RXH|1|S1|C|1963
8RXH|1|S1|C|1964
*
8RXH|1|S1|G|1985
8RXH|1|S1|C|1986
8RXH|1|S1|G|1987
8RXH|1|S1|C|1988
8RXH|1|S1|A|1989
8RXH|1|S1|A|1990
8RXH|1|S1|C|1991

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SR

Putative 40S ribosomal protein S18

Chain SX

40S ribosomal protein S19-like protein

Chain Sa

40S ribosomal protein S25