IL_8RXH_301

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

(PSU)UC*GCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_301 not in the Motif Atlas

Homologous match to IL_8P9A_274

Geometric discrepancy: 0.4287

The information below is about IL_8P9A_274

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|L1|PSU|1177
8RXH|1|L1|U|1178
8RXH|1|L1|C|1179
*
8RXH|1|L1|G|1193
8RXH|1|L1|C|1194
8RXH|1|L1|A|1195

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L2

Large subunit ribosomal RNA; LSU rRNA

Chain L8

5S ribosomal RNA; 5S rRNA

Chain Lb

60S ribosomal protein L29

Chain Lc

Putative 60S ribosomal protein L7