IL_8RXH_307

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGAA*U(OMC)

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_307 not in the Motif Atlas

Geometric match to IL_8C3A_082

Geometric discrepancy: 0.0813

The information below is about IL_8C3A_082

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

8RXH|1|L2|G|82
8RXH|1|L2|G|83
8RXH|1|L2|A|84
8RXH|1|L2|A|85
*
8RXH|1|L2|U|582
8RXH|1|L2|OMC|583

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LB

Putative ribosomal protein L3

Chain LJ

Putative 60S ribosomal protein L23