IL_8RXH_308
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GGAAGUCGG*CUGU(OMC)
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_308 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.065
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
8RXH|1|L2|G|82
8RXH|1|L2|G|83
8RXH|1|L2|A|84
8RXH|1|L2|A|85
8RXH|1|L2|G|86
8RXH|1|L2|U|87
8RXH|1|L2|C|88
8RXH|1|L2|G|89
8RXH|1|L2|G|90
*
8RXH|1|L2|C|579
8RXH|1|L2|U|580
8RXH|1|L2|G|581
8RXH|1|L2|U|582
8RXH|1|L2|OMC|583
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain LB
- Putative ribosomal protein L3
- Chain LJ
- Putative 60S ribosomal protein L23
Coloring options: