IL_8RXH_325

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GGA*U(PSU)

Length

5 nucleotides

Bulged bases

8RXH|1|S1|G|1502

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_325 not in the Motif Atlas

Homologous match to IL_8C3A_448

Geometric discrepancy: 0.3024

The information below is about IL_8C3A_448

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_00225.11

Basepair signature

cWW-L-cWW

Number of instances in this motif group

46

Unit IDs

8RXH|1|S1|G|1501
8RXH|1|S1|G|1502
8RXH|1|S1|A|1503
*
8RXH|1|S1|U|2047
8RXH|1|S1|PSU|2048

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain S5

mRNA_chain_S5

Chain Sb

40S ribosomal protein S26