IL_8RXH_326

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GCG*(OMC)AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_326 not in the Motif Atlas

Homologous match to IL_8P9A_432

Geometric discrepancy: 0.3997

The information below is about IL_8P9A_432

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|S1|G|1524
8RXH|1|S1|C|1525
8RXH|1|S1|G|1526
*
8RXH|1|S1|OMC|1866
8RXH|1|S1|A|1867
8RXH|1|S1|C|1868

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SL

Putative 40S ribosomal protein S16

Chain SR

Putative 40S ribosomal protein S18

Chain SX

40S ribosomal protein S19-like protein