IL_8RXH_330
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CG*CA(OMG)
- Length
- 5 nucleotides
- Bulged bases
- 8RXH|1|S1|A|1828
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_330 not in the Motif Atlas
- Homologous match to IL_8C3A_458
- Geometric discrepancy: 0.1002
- The information below is about IL_8C3A_458
- Detailed Annotation
- Single bulged A
- Broad Annotation
- No text annotation
- Motif group
- IL_31462.3
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 112
Unit IDs
8RXH|1|S1|C|1632
8RXH|1|S1|G|1633
*
8RXH|1|S1|C|1827
8RXH|1|S1|A|1828
8RXH|1|S1|OMG|1829
Current chains
- Chain S1
- SSU_rRNA_chain_S1
Nearby chains
- Chain S2
- Transfer RNA; tRNA
- Chain S5
- mRNA_chain_S5
- Chain SC
- Putative 40S ribosomal protein S3
- Chain SF
- 40S ribosomal protein S2
- Chain SL
- Putative 40S ribosomal protein S16
- Chain SM
- Putative ribosomal protein S20
- Chain SS
- Putative ribosomal protein S29
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