IL_8RXH_337

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

A(OMG)GACAAGUCUG*CAGCU

Length

17 nucleotides

Bulged bases

8RXH|1|S1|U|607

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RXH|1|S1|A|599
8RXH|1|S1|OMG|600
8RXH|1|S1|G|601
8RXH|1|S1|A|602
8RXH|1|S1|C|603
8RXH|1|S1|A|604
8RXH|1|S1|A|605
8RXH|1|S1|G|606
8RXH|1|S1|U|607
8RXH|1|S1|C|608
8RXH|1|S1|U|609
8RXH|1|S1|G|610
*
8RXH|1|S1|C|633
8RXH|1|S1|A|634
8RXH|1|S1|G|635
8RXH|1|S1|C|636
8RXH|1|S1|U|637

Current chains

Chain S1

SSU_rRNA_chain_S1

Nearby chains

Chain SC

Putative 40S ribosomal protein S3

Chain SD

Putative 40S ribosomal protein S9

Chain SF

40S ribosomal protein S2

Chain SP

Putative 40S ribosomal protein S23

Chain Se

40S ribosomal protein S30