IL_8S8D_012
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GGAUAUC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 8S8D|1|2|U|169
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_012 not in the Motif Atlas
- Homologous match to IL_8C3A_402
- Geometric discrepancy: 0.1216
- The information below is about IL_8C3A_402
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.4
- Basepair signature
- cWW-L-R-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
8S8D|1|2|G|142
8S8D|1|2|G|143
8S8D|1|2|A|144
8S8D|1|2|U|145
8S8D|1|2|A|146
8S8D|1|2|U|147
8S8D|1|2|C|148
*
8S8D|1|2|G|164
8S8D|1|2|C|165
8S8D|1|2|U|166
8S8D|1|2|A|167
8S8D|1|2|A|168
8S8D|1|2|U|169
8S8D|1|2|A|170
8S8D|1|2|C|171
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain G
- Small ribosomal subunit protein eS6
- Chain Y
- 40S ribosomal protein S24
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