IL_8S8D_033
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GUC*GC
- Length
- 5 nucleotides
- Bulged bases
- 8S8D|1|2|U|557
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_033 not in the Motif Atlas
- Homologous match to IL_8C3A_424
- Geometric discrepancy: 0.1746
- The information below is about IL_8C3A_424
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.2
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 94
Unit IDs
8S8D|1|2|G|556
8S8D|1|2|U|557
8S8D|1|2|C|558
*
8S8D|1|2|G|585
8S8D|1|2|C|586
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain D
- 40S ribosomal protein S3
- Chain X
- KLLA0B11231p
- Chain e
- 40S ribosomal protein S30
Coloring options: