IL_8S8D_034
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 8S8D|1|2|A|578, 8S8D|1|2|U|580, 8S8D|1|2|U|581
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_034 not in the Motif Atlas
- Homologous match to IL_8P9A_404
- Geometric discrepancy: 0.1544
- The information below is about IL_8P9A_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8S8D|1|2|G|561
8S8D|1|2|U|562
8S8D|1|2|G|563
8S8D|1|2|C|564
8S8D|1|2|C|565
8S8D|1|2|A|566
8S8D|1|2|G|567
*
8S8D|1|2|C|574
8S8D|1|2|G|575
8S8D|1|2|G|576
8S8D|1|2|U|577
8S8D|1|2|A|578
8S8D|1|2|A|579
8S8D|1|2|U|580
8S8D|1|2|U|581
8S8D|1|2|C|582
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain D
- 40S ribosomal protein S3
- Chain X
- KLLA0B11231p
- Chain e
- 40S ribosomal protein S30
- Chain i
- Eukaryotic translation initiation factor 1A
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