IL_8S8D_067
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- UGCAU*AUG
- Length
- 8 nucleotides
- Bulged bases
- 8S8D|1|2|C|1273
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_067 not in the Motif Atlas
- Geometric match to IL_8C3A_456
- Geometric discrepancy: 0.1202
- The information below is about IL_8C3A_456
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76319.3
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 4
Unit IDs
8S8D|1|2|U|1271
8S8D|1|2|G|1272
8S8D|1|2|C|1273
8S8D|1|2|A|1274
8S8D|1|2|U|1275
*
8S8D|1|2|A|1434
8S8D|1|2|U|1435
8S8D|1|2|G|1436
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain D
- 40S ribosomal protein S3
- Chain K
- KLLA0B08173p
- Chain U
- Small ribosomal subunit protein uS10
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
- Chain i
- Eukaryotic translation initiation factor 1A
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