IL_8S8D_094
3D structure
- PDB id
- 8S8D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.45 Å
Loop
- Sequence
- AUAAGGAUUG*CUUGAUUU
- Length
- 18 nucleotides
- Bulged bases
- 8S8D|1|2|G|1227
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8D_094 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.2744
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
8S8D|1|2|A|1223
8S8D|1|2|U|1224
8S8D|1|2|A|1225
8S8D|1|2|A|1226
8S8D|1|2|G|1227
8S8D|1|2|G|1228
8S8D|1|2|A|1229
8S8D|1|2|U|1230
8S8D|1|2|U|1231
8S8D|1|2|G|1232
*
8S8D|1|2|C|1251
8S8D|1|2|U|1252
8S8D|1|2|U|1253
8S8D|1|2|G|1254
8S8D|1|2|A|1255
8S8D|1|2|U|1256
8S8D|1|2|U|1257
8S8D|1|2|U|1258
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain K
- KLLA0B08173p
- Chain M
- 40S ribosomal protein S12
- Chain d
- Small ribosomal subunit protein uS14
- Chain f
- Small ribosomal subunit protein eS31
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