IL_8S8D_095

3D structure

PDB id

8S8D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.45 Å

Loop

Sequence

UGC*GUUG

Length

7 nucleotides

Bulged bases

8S8D|1|2|U|1369

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8D_095 not in the Motif Atlas

Homologous match to IL_8P9A_471

Geometric discrepancy: 0.5961

The information below is about IL_8P9A_471

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_71625.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

79

Unit IDs

8S8D|1|2|U|1352
8S8D|1|2|G|1353
8S8D|1|2|C|1354
*
8S8D|1|2|G|1367
8S8D|1|2|U|1368
8S8D|1|2|U|1369
8S8D|1|2|G|1370

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain T

KLLA0A07194p