IL_8S8E_043

3D structure

PDB id

8S8E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.85 Å

Loop

Sequence

UGGU*ACCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8E_043 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.3345

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_39691.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

9

Unit IDs

8S8E|1|2|U|821
8S8E|1|2|G|822
8S8E|1|2|G|823
8S8E|1|2|U|824
*
8S8E|1|2|A|846
8S8E|1|2|C|847
8S8E|1|2|C|848
8S8E|1|2|A|849

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

KLLA0A10483p