IL_8S8F_012

3D structure

PDB id

8S8F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-3.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.95 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8S8F|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8F_012 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1303

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8S8F|1|2|G|142
8S8F|1|2|G|143
8S8F|1|2|A|144
8S8F|1|2|U|145
8S8F|1|2|A|146
8S8F|1|2|U|147
8S8F|1|2|C|148
*
8S8F|1|2|G|164
8S8F|1|2|C|165
8S8F|1|2|U|166
8S8F|1|2|A|167
8S8F|1|2|A|168
8S8F|1|2|U|169
8S8F|1|2|A|170
8S8F|1|2|C|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24