IL_8S8G_036

3D structure

PDB id

8S8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGUAG*UCAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8G_036 not in the Motif Atlas

Homologous match to IL_8C3A_428

Geometric discrepancy: 0.1058

The information below is about IL_8C3A_428

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.5

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8S8G|1|2|C|626
8S8G|1|2|G|627
8S8G|1|2|U|628
8S8G|1|2|A|629
8S8G|1|2|G|630
*
8S8G|1|2|U|967
8S8G|1|2|C|968
8S8G|1|2|A|969
8S8G|1|2|A|970
8S8G|1|2|G|971

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

KLLA0A10483p

Chain N

KLLA0F18040p

Chain W

Small ribosomal subunit protein uS8

Chain X

KLLA0B11231p