IL_8S8G_040

3D structure

PDB id

8S8G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UAC*GAAUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8G_040 not in the Motif Atlas

Geometric match to IL_9NLN_006

Geometric discrepancy: 0.3966

The information below is about IL_9NLN_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24466.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

9

Unit IDs

8S8G|1|2|U|745
8S8G|1|2|A|746
8S8G|1|2|C|747
*
8S8G|1|2|G|801
8S8G|1|2|A|802
8S8G|1|2|A|803
8S8G|1|2|U|804
8S8G|1|2|A|805

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

KLLA0A10483p

Chain W

Small ribosomal subunit protein uS8

Chain X

KLLA0B11231p