IL_8S8H_031
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGGGCAAG*CU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8H_031 not in the Motif Atlas
- Homologous match to IL_8C3A_423
- Geometric discrepancy: 0.1772
- The information below is about IL_8C3A_423
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_41203.2
- Basepair signature
- cWW-L-cWW-L-L-R-cSH
- Number of instances in this motif group
- 11
Unit IDs
8S8H|1|2|A|549
8S8H|1|2|G|550
8S8H|1|2|G|551
8S8H|1|2|G|552
8S8H|1|2|C|553
8S8H|1|2|A|554
8S8H|1|2|A|555
8S8H|1|2|G|556
*
8S8H|1|2|C|586
8S8H|1|2|U|587
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 3
- mRNA (5'-R(P*AP*AP*U)-3')
- Chain C
- Small ribosomal subunit protein uS5
- Chain J
- KLLA0E23673p
- Chain e
- 40S ribosomal protein S30
Coloring options: