IL_8S8H_058
3D structure
- PDB id
- 8S8H (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCUG*CGCG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8H_058 not in the Motif Atlas
- Geometric match to IL_5LQT_002
- Geometric discrepancy: 0.3971
- The information below is about IL_5LQT_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8S8H|1|2|C|1172
8S8H|1|2|C|1173
8S8H|1|2|U|1174
8S8H|1|2|G|1175
*
8S8H|1|2|C|1461
8S8H|1|2|G|1462
8S8H|1|2|C|1463
8S8H|1|2|G|1464
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Transfer RNA; tRNA
- Chain Q
- Small ribosomal subunit protein uS9
- Chain S
- KLLA0B01562p
- Chain T
- KLLA0A07194p
Coloring options: