IL_8S8H_064

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

ACA*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8H_064 not in the Motif Atlas

Homologous match to IL_8C3A_454

Geometric discrepancy: 0.264

The information below is about IL_8C3A_454

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_10167.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

49

Unit IDs

8S8H|1|2|A|1233
8S8H|1|2|C|1234
8S8H|1|2|A|1235
*
8S8H|1|2|U|1248
8S8H|1|2|U|1249
8S8H|1|2|U|1250

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain d

Small ribosomal subunit protein uS14

Chain f

Small ribosomal subunit protein eS31