IL_8S8H_088

3D structure

PDB id

8S8H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-2.2)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUCA*UCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8H_088 not in the Motif Atlas

Homologous match to IL_8P9A_462

Geometric discrepancy: 0.1472

The information below is about IL_8P9A_462

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

29

Unit IDs

8S8H|1|2|C|1673
8S8H|1|2|U|1674
8S8H|1|2|C|1675
8S8H|1|2|A|1676
*
8S8H|1|2|U|1721
8S8H|1|2|C|1722
8S8H|1|2|U|1723
8S8H|1|2|G|1724

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain I

40S ribosomal protein S8