IL_8S8J_068

3D structure

PDB id

8S8J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

CCG*CA(2MG)G

Length

7 nucleotides

Bulged bases

8S8J|1|2|A|1425

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8J_068 not in the Motif Atlas

Geometric match to IL_5UNE_001

Geometric discrepancy: 0.2203

The information below is about IL_5UNE_001

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_87720.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8S8J|1|2|C|1278
8S8J|1|2|C|1279
8S8J|1|2|G|1280
*
8S8J|1|2|C|1424
8S8J|1|2|A|1425
8S8J|1|2|2MG|1426
8S8J|1|2|G|1427

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 3

mRNA (5'-R(P*AP*AP*U)-3')

Chain C

Small ribosomal subunit protein uS5

Chain D

40S ribosomal protein S3

Chain U

Small ribosomal subunit protein uS10

Chain d

Small ribosomal subunit protein uS14