IL_8S8J_084
3D structure
- PDB id
- 8S8J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation (model py48S-AUC-eIF5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8J_084 not in the Motif Atlas
- Homologous match to IL_8P9A_457
- Geometric discrepancy: 0.3002
- The information below is about IL_8P9A_457
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.3
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 47
Unit IDs
8S8J|1|2|C|1651
8S8J|1|2|G|1652
8S8J|1|2|A|1653
8S8J|1|2|U|1654
*
8S8J|1|2|A|1742
8S8J|1|2|G|1743
8S8J|1|2|A|1744
8S8J|1|2|G|1745
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain h
- 40S ribosomal protein L41-A
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