IL_8S8K_013

3D structure

PDB id

8S8K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGACC*GGAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8S8K_013 not in the Motif Atlas

Geometric match to IL_8C3A_394

Geometric discrepancy: 0.3342

The information below is about IL_8C3A_394

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_30569.1

Basepair signature

cWW-cWW-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

8S8K|1|2|C|185
8S8K|1|2|G|186
8S8K|1|2|A|187
8S8K|1|2|C|188
8S8K|1|2|C|189
*
8S8K|1|2|G|194
8S8K|1|2|G|195
8S8K|1|2|A|196
8S8K|1|2|A|197
8S8K|1|2|G|198

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein S8