IL_8S8K_036
3D structure
- PDB id
- 8S8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8K_036 not in the Motif Atlas
- Homologous match to IL_8P9A_407
- Geometric discrepancy: 0.0967
- The information below is about IL_8P9A_407
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_05821.1
- Basepair signature
- cWW-tSH-tHW-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
8S8K|1|2|C|626
8S8K|1|2|G|627
8S8K|1|2|U|628
8S8K|1|2|A|629
8S8K|1|2|G|630
*
8S8K|1|2|U|967
8S8K|1|2|C|968
8S8K|1|2|A|969
8S8K|1|2|A|970
8S8K|1|2|G|971
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- KLLA0A10483p
- Chain N
- KLLA0F18040p
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- KLLA0B11231p
- Chain n
- Eukaryotic translation initiation factor 3 subunit C
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