IL_8S8K_097
3D structure
- PDB id
- 8S8K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in swivelled conformation (model py48S-AUC-swiv-eIF1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8S8K|1|2|A|1753, 8S8K|1|2|A|1754
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8S8K_097 not in the Motif Atlas
- Geometric match to IL_2OE8_002
- Geometric discrepancy: 0.387
- The information below is about IL_2OE8_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34618.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8S8K|1|2|C|1642
8S8K|1|2|G|1643
8S8K|1|2|C|1644
8S8K|1|2|U|1645
*
8S8K|1|2|A|1751
8S8K|1|2|A|1752
8S8K|1|2|A|1753
8S8K|1|2|A|1754
8S8K|1|2|G|1755
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain X
- KLLA0B11231p
- Chain h
- 60S ribosomal protein L41-A
- Chain i
- Eukaryotic translation initiation factor 1A
- Chain m
- Eukaryotic translation initiation factor eIF-1
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