IL_8SCB_029

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

8SCB|1|5|G|666, 8SCB|1|5|A|667, 8SCB|1|5|C|668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_029 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1874

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

8SCB|1|5|G|487
8SCB|1|5|G|488
*
8SCB|1|5|C|665
8SCB|1|5|G|666
8SCB|1|5|A|667
8SCB|1|5|C|668
8SCB|1|5|C|669

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain Q

Ribosomal protein L18

Chain r

eL28