IL_8SCB_035

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

8SCB|1|5|A|943

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_035 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2446

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

8SCB|1|5|A|723
8SCB|1|5|C|724
*
8SCB|1|5|G|942
8SCB|1|5|A|943
8SCB|1|5|A|944
8SCB|1|5|U|945

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain C

60S ribosomal protein L4

Chain F

60S ribosomal protein L7