IL_8SCB_047

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_047 not in the Motif Atlas

Geometric match to IL_5F5F_003

Geometric discrepancy: 0.1297

The information below is about IL_5F5F_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8SCB|1|5|G|1173
8SCB|1|5|G|1174
8SCB|1|5|A|1175
*
8SCB|1|5|U|1186
8SCB|1|5|G|1187
8SCB|1|5|C|1188

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain D

Ribosomal_L18_c domain-containing protein