IL_8SCB_051

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_051 not in the Motif Atlas

Geometric match to IL_4KZD_002

Geometric discrepancy: 0.2398

The information below is about IL_4KZD_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

8SCB|1|5|C|1431
8SCB|1|5|G|1432
8SCB|1|5|A|1433
8SCB|1|5|G|1434
*
8SCB|1|5|C|1450
8SCB|1|5|G|1451
8SCB|1|5|A|1452
8SCB|1|5|G|1453

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain Q

Ribosomal protein L18