IL_8SCB_092

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGUGG*CGC

Length

9 nucleotides

Bulged bases

8SCB|1|5|G|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_092 not in the Motif Atlas

Geometric match to IL_4WF9_041

Geometric discrepancy: 0.197

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_30229.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

9

Unit IDs

8SCB|1|5|G|2542
8SCB|1|5|A|2543
8SCB|1|5|G|2544
8SCB|1|5|U|2545
8SCB|1|5|G|2546
8SCB|1|5|G|2547
*
8SCB|1|5|C|2772
8SCB|1|5|G|2773
8SCB|1|5|C|2774

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain k

60S ribosomal protein L38