IL_8SCB_108

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(OMG)G*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_108 not in the Motif Atlas

Geometric match to IL_5C5W_002

Geometric discrepancy: 0.0937

The information below is about IL_5C5W_002

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

8SCB|1|5|G|3626
8SCB|1|5|OMG|3627
8SCB|1|5|G|3628
*
8SCB|1|5|C|3833
8SCB|1|5|C|3834
8SCB|1|5|C|3835

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain 9

Small subunit ribosomal RNA; SSU rRNA

Chain V

Ribosomal protein L23