IL_8SCB_129

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAGC*GGCU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_129 not in the Motif Atlas

Geometric match to IL_255D_001

Geometric discrepancy: 0.3895

The information below is about IL_255D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_13404.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

8SCB|1|5|G|4097
8SCB|1|5|A|4098
8SCB|1|5|G|4099
8SCB|1|5|C|4100
*
8SCB|1|5|G|4108
8SCB|1|5|G|4109
8SCB|1|5|C|4110
8SCB|1|5|U|4111

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain g

60S ribosomal protein L34