IL_8SCB_149

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

G(PSU)U*AAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_149 not in the Motif Atlas

Geometric match to IL_2ET8_001

Geometric discrepancy: 0.1698

The information below is about IL_2ET8_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8SCB|1|5|G|4578
8SCB|1|5|PSU|4579
8SCB|1|5|U|4580
*
8SCB|1|5|A|4723
8SCB|1|5|A|4724
8SCB|1|5|C|4725

Current chains

Chain 5

28S_rRNA

Nearby chains

Chain B

Ribosomal protein L3