IL_8SCB_183

3D structure

PDB id

8SCB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Terminating ribosome with SRI-41315

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GCAU*A(PSU)AU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8SCB_183 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2871

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8SCB|1|9|G|23
8SCB|1|9|C|24
8SCB|1|9|A|25
8SCB|1|9|U|26
*
8SCB|1|9|A|648
8SCB|1|9|PSU|649
8SCB|1|9|A|650
8SCB|1|9|U|651

Current chains

Chain 9

18S_rRNA

Nearby chains

Chain JJ

uS4

Chain XX

uS12